We evolved in a microbial world. As a result, resident microbial communities (collectively referred to as the microbiota) are dynamic and integral components of our health. Even in early life, the microbiota can have outsized impacts, and the outcomes of these “host-microbe” interactions have important implications for long-term health. Despite their microscopic size, the commensal organisms (such as bacteria and fungi) that inhabit our bodies in droves can have far-reaching effects–from the gut to the brain. Although the influence of the microbiota on host biology is extensive, a large percentage of microbial genomes are unexplored, often termed “microbial dark matter.” Given the millennia that microbes have spent interacting with animal cells, the functions hidden within their genomes likely hold the key to unlocking novel biochemical mechanisms that impact human health. By mining this underappreciated source we’ve uncovered a network of microbial signaling cues that mammals have evolved to detect to tune the development of their insulin-producing beta-cell cells. We’ve identified specific microbes that can promote beta-cell development in the infant pancreas. By studying how the host senses these unique microbial cues, we hope to develop novel approaches to prevent or reverse diabetes, a disease characterized by beta-cell loss.